37 template <
typename trace_t>
42 "Value type must either be a trace_directions object or a simd vector.");
Provides seqan3::aligned_allocator.
Provides seqan3::detail::alignment_coordinate.
Allocates uninitialized storage whose memory-alignment is specified by alignment.
Definition: aligned_allocator.hpp:72
Implements an internal alignment coordinate that can be used as an argument to the std::ranges::iota_...
Definition: alignment_coordinate.hpp:65
The generic simd concept.
The internal SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
A crtp-base class for alignment traceback matrices.
Definition: alignment_trace_matrix_base.hpp:39
size_t size_type
The size type.
Definition: alignment_trace_matrix_base.hpp:55
std::vector< element_type, allocator_type > cache_left
Internal cache for the trace values to the left.
Definition: alignment_trace_matrix_base.hpp:61
size_type num_rows
The number of num_rows.
Definition: alignment_trace_matrix_base.hpp:67
element_type cache_up
Internal cache for the last trace value above.
Definition: alignment_trace_matrix_base.hpp:63
trace_t element_type
The actual element type.
Definition: alignment_trace_matrix_base.hpp:47
size_type num_cols
The number of columns.
Definition: alignment_trace_matrix_base.hpp:65
pool_type data
The linearised matrix storing the trace data in column-major-order.
Definition: alignment_trace_matrix_base.hpp:59
Provides the declaration of seqan3::detail::trace_directions.
Provides seqan3::detail::two_dimensional_matrix.
Provides seqan3::simd::simd_concept.